PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012931.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TALE
Protein Properties Length: 518aa    MW: 54408.6 Da    PI: 6.7198
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012931.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.91.7e-084384761854
                 HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 +Fe+  ++yp+ +e+  LA++ gLt +qV++WF N R +
  Do012931.1 438 MFENflHPYPKDNEKDVLAARSGLTRNQVSNWFINARVR 476
                 5776679******************************88 PP
2BELL353.5e-12296371472
        BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeava.......glgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 e q+ k+ Ll++l+ +d++Y+q+ +++q   + F++ +       g+ +a + + +A +a+S  +r L+ +ia+ i
  Do012931.1 296 EAQRVKSDLLKMLQLMDEKYNQCLDEIQSTTAKFNTLMhsgggagGVSNASILAPFAHRAVSAVYRGLRRRIAGEI 371
                 78999******************************9874444333566899*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-4223369IPR006563POX domain
PfamPF075266.8E-26228368IPR006563POX domain
PROSITE profilePS5007111.353417480IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-25420493IPR009057Homeodomain-like
CDDcd000862.41E-11420481No hitNo description
SMARTSM003892.7E-6420484IPR001356Homeobox domain
SuperFamilySSF466891.37E-15421489IPR009057Homeodomain-like
PfamPF059201.1E-15437476IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MASNPSTFSP IGVDAMTGGY FMAGGSSGMM SADVPHFHPG VLLEHGGFGF GLGDATVGSA  60
ATASDMGGNF AANNVMLASF ASHLFTTAPA PPQNDHIGGR TPPEDMDDGY GAGSGGPDHS  120
GGMAVWSSPS SKKPAGTWSS AGGSRAVSVH EAYHLADVAG FHYSLAAAAV NAPASSELSL  180
TLCSKSSWDS ALNAADQCSS GASRSALTEL PQALYPRARP RPAHFSMVVA RSRYAAVAQE  240
VLNDVVGHML DGVADVAADS CSGVDGGGAR PSSGSAGAPS VVSSNRLMAS SEDGGEAQRV  300
KSDLLKMLQL MDEKYNQCLD EIQSTTAKFN TLMHSGGGAG GVSNASILAP FAHRAVSAVY  360
RGLRRRIAGE IIAAASRATG WGESSSSVTA AGDAERSWES EFIKKHWAAQ QLRRGEQQCW  420
RPQRGLPEKS VAVLKAWMFE NFLHPYPKDN EKDVLAARSG LTRNQVSNWF INARVRLWKP  480
MIEEMYQDLK KSSGAGEQGP GLEQHTSKRR ICELEDVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951423.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_004951424.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_004951425.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_004951426.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_012699416.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_012699423.10.0PREDICTED: homeobox protein ATH1-like
TrEMBLK3YRI90.0K3YRI9_SETIT; Uncharacterized protein
STRINGSi016883m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-49homeobox gene 1